Publications

List of publications

• Yiming Li, Dongfang Liang, Alexandre Kabla, Yuning Zhang, Xin Yang, Sensitivity of acoustofluidic particle manipulation to microchannel height in standing surface acoustic wave-based microfluidic devices, Physics of Fluids 35:122018 (2023), doi:10.1063/5.0177118


• Y. Wang, Y. Wang, K. Soga, J.T. Dejong and A.J. Kabla, Microscale investigations of temperature-dependent microbially induced carbonate precipitation (MICP) in the temperature range 4–50 °C, Acta Geotechnica 18:2239 (2023), doi:10.1007/s11440-022-01664-9


• R. Rezk, F. Basar, J. Mediavillo, R. Donaldson, C. Watts, K. Franze, A.J. Kabla, Spatial heterogeneity of cell-matrix adhesive forces predicts human glioblastoma migration, Preprint (2023), doi:10.1101/2022.12.19.520994


• J. Duque, A. Bonfanti, J. Fouchard, E. Ferber, A. Harris, A.J. Kabla, G.T. Charras, Fracture in Living Cell Monolayers, Preprint (2023), doi:10.1101/2023.01.05.522736


• A. Kabla, B. Ladoux and J.-M. Di Meglio, Editorial - Tissue Mechanics, The European Physical Journal E, 45:90 (2022), doi:10.1140/epje/s10189-022-00240-z


• A. Lisica, J. Fouchard, M. Kelkar, T. Wyatt, J. Duque, A.-B. Ndiaye, A. Bonfanti, B. Baum, A.J. Kabla, G.T. Charras, Tension at intercellular junctions is necessary for accurate orientation of cell division in the epithelium plane, PNAS 119:49 (2022), doi:10.1073/pnas.2201600119


• Y. Wang, C. Konstantinou, K. Soga, G. Biscontin and A.J. Kabla, Use of microfluidic experiments to optimize MICP treatment protocols for effective strength enhancement of MICP-treated sandy soils, Acta Geotechnica 17:3817 (2022), doi:10.1007/s11440-022-01478-9


• A. Bonfanti, J. Duque, A. Kabla and G. Charras, Fracture in living tissues, Trends in Cell Biology 32:537-551 (2022), doi:10.1016/j.tcb.2022.01.005


• S. McDermott, J. Kim, A.A. Leledaki, D. Parry, L. Lee, A. Kabla, C. Mkindi, R. Bowman and P. Cicuta, autohaem: 3D printed devices for automated preparation of blood smears, Rev Sci Instrum 93:014104 (2022), doi:10.1063/5.0076901


• D. Bhattacharya, J. Zhong, S. Tavakoli, A. Kabla and P. Matsudaira, Strain maps characterize the symmetry of convergence and extension patterns during zebrafish gastrulation, Scientific Reports volume 11:19357 (2021), doi:10.1038/s41598-021-98233-z


• Y. Wang, K. Soga, J.T. Dejong and A.J. Kabla, Effects of Bacterial Density on Growth Rate and Characteristics of Microbial-Induced CaCO3 Precipitates: Particle-Scale Experimental Study, J. Geotech. Geoenviron. Eng. 147:04021036 (2021), doi:10.1061/(ASCE)GT.1943-5606.0002509


• P. Recho, J. Fouchard, T. Wyatt, N. Khalilgharibi, G. Charras and A. Kabla, Tug-of-war between stretching and bending in living cell sheets, Physical Review E 102:012401 (2020), doi:10.1103/PhysRevE.102.012401


• R. Rezk, B.Z. Jia, A. Wendler, I. Dimov, C. Watts, A.E. Markaki, K. Franze, A.J. Kabla, Spatial heterogeneity of cell-matrix adhesive forces predicts human glioblastoma migration, Neuro-Oncology Advances (2020), doi:10.1093/noajnl/vdaa081


• A. Bonfanti, J.L. Kaplan, G. Charras and A. Kabla, Fractional viscoelastic models for power-law materials, Soft Matter 16:6002-6020 (2020), doi:10.1039/D0SM00354A


• S. Jain, V.M.L. Cachoux, G.H.N.S. Narayana, S. de Beco, J. D’Alessandro, V. Cellerin, T. Chen, M.L. Heuzé, P. Marcq, R.-M. Mège, A.J. Kabla, C.T. Lim and B. Ladoux, The role of single-cell mechanical behaviour and polarity in driving collective cell migration, Nature Physics (2020), doi:10.1038/s41567-020-0875-z


• N. Srivastava, D. Traynor, M. Piel, A.J. Kabla, R.R. Kay, Pressure Sensing Through Piezo Channels Controls Whether Cells Migrate With Blebs or Pseudopods, PNAS 117(5):2506-2512 (2020), doi:10.1073/pnas.1905730117


• J. Fouchard, T.P.J. Wyatt, A. Proag, A. Lisica, N. Khalilgharibi, P. Recho, M. Suzanne, A. Kabla, G. Charras, Curling of Epithelial Monolayers Reveals Coupling Between Active Bending and Tissue Tension, PNAS 117(17):9377-9383 (2020), doi:10.1073/pnas.1917838117


• A. Bonfanti, J. Fouchard, N. Khalilgharibi, G. Charras and A. Kabla, A unified rheological model for cells and cellularised materials, Royal Society Open Science 7:190920 (2020), doi:10.1098/rsos.190920


• T.P.J. Wyatt, J. Fouchard, A. Lisica, N. Khalilgharibi, B. Baum, P. Recho, A.J. Kabla, G.T. Charras, Actomyosin Controls Planarity and Folding of Epithelia in Response to Compression, Nature Materials 19(1):109-117 (2020), doi:10.1038/s41563-019-0461-x


• Y. Wang, K. Soga, J.T. Dejong and A.J. Kabla, A microfluidic chip and its use in characterising the particle-scale behaviour of microbial-induced calcium carbonate precipitation (MICP), Géotechnique 69(12):1086-1094 (2019), doi:10.1680/jgeot.18.P.031


• J.L. Kaplan, A. Bonfanti and A. Kabla, RHEOS.jl - A Julia Package for Rheology Data Analysis, Journal of Open Source Software 4(41):1700 (2020), doi:10.21105/joss.01700


• Y. Wang, K. Soga, J.T. Dejong and A.J. Kabla, Microscale Visualization of Microbial-Induced Calcium Carbonate Precipitation Processes, Journal of Geotechnique and Geoenvironmental Engineering 145(9):04019045 (2019), doi:10.1061/(ASCE)GT.1943-5606.0002079


• N. Khalilgharibi, J. Fouchard, N. Asadipour, R. Barrientos, M. Duda, A. Bonfanti, A. Yonis, A. Harris, P. Mosaffa, Y. Fujita, A. Kabla, Y. Mao, B. Baum, J. Muñoz, M. Miodownik and G. Charras, Stress relaxation in epithelial monolayers is controlled by the actomyosin cortex, Nature Physics 15:839–847 (2019), doi:10.1038/s41567-019-0516-6


• S. Curran, C. Strandkvist, J. Bathmann, M. de Gennes, A. Kabla, G. Salbreux and B. Baum, Myosin II Controls Junction Fluctuations to Guide Epithelial Tissue Ordering, Developmental Cell 43(4):480-492 (2017), doi:10.1016/j.devcel.2017.09.018


• A. Hallou, J. Jennings and A. Kabla, Tumour Heterogeneity Promotes Collective Invasion and Cancer Metastatic Dissemination, Royal Society Open Science 4(8):161007 (2017), doi:10.1098/rsos.161007


• N. Srivastava, R.R. Kay and A. Kabla, The dynamic mechanical properties of cellularised aggregates, Molecular Biology of the Cell 28(6):809-816 (2017), doi:10.1091/mbc.E16-08-0575


• N. Khalilgharibi, J. Fouchard, P. Recho, G. Charras and A. Kabla, The dynamic mechanical properties of cellularised aggregates, Current Opinion in Cell Biology 42:113–120 (2016), doi:10.1016/j.ceb.2016.06.003


• J. Richardson, A. Gauert, L.B. Montecinos, L. Fanlo, Z.M. Alhashem, R. Assar, E. Marti, A. Kabla, S. Härtel, C. Linker, Leader cells define directionality of trunk, but not cranial, neural crest cell migration, Cell Reports, 15:2076–2088 (2016), doi:10.1016/j.celrep.2016.04.067


• L. Willis and A. Kabla, Emergent Patterns from Probabilistic Generalisations of Lateral Activation and Inhibition, Journal of the Royal Society Interface 13:20151077 (2016), doi:10.1098/rsif.2015.1077


• J.P. Sharkey, D.C.W. Foo, A. Kabla, J.J. Baumberg and R.W. Bowman, A one-piece 3D printed flexure translation stage for open-source microscopy, Review of Scientific Instruments 87:025104 (2016), doi:10.1063/1.4941068


• A. Ravasio, I. Cheddadi, T. Chen, T. Pereira, H.T. Ong, C. Bertocchi, A. Brugues, A. Jacinto, A.J. Kabla, Y. Toyama, X. Trepat, N. Gov, L. Almeida, B. Ladoux, Tissue geometry dictates epithelial closure efficiency, Nature Communication 6:7683 (2015), doi:10.1038/ncomms8683


• S. Hu, Y.‐H. Tee, A. Kabla, R.Zaidel‐Bar, A. Bershadsky and P. Hersen, Structured illumination microscopy reveals focal adhesions are composed of linear subunits, Cytoskeleton 72(5):235–245 (2015), doi:10.1002/cm.21223


• T.P.J. Wyatt, A.R. Harris, M. Lam, Q. Cheng, J. Bellis, A. Dimitracopoulos, A.J. Kabla, G.T. Charras and B. Baum, Emergence of homeostatic epithelial packing and stress dissipation through divisions oriented along the long cell axis, PNAS 112:5726-5731 (2015), doi:10.1073/pnas.1420585112


• C. Strandkvist, J. Juul, B. Baum, A. Kabla and T. Duke, A kinetic mechanism for cell sorting based on local variations in cell motility, Interface Focus 4:20140013 (2014), doi:10.1098/rsfs.2014.0013


• S. Kuriyama, E. Theveneau, A. Benedetto, M. Parsons, M. Tanaka, G. Charras, A. Kabla and R. Mayor, In vivo collective cell migration requires an LPAR2-dependent increase in tissue fluidity, Journal of Cell Biology 206:113-127 (2014), doi:10.1083/jcb.201402093


• S. Pagliara, K. Franze, C.R. McClain, G.W. Wylde, C.L. Fisher, R.J.M. Franklin, A.J. Kabla, U.F. Keyser and K.J. Chalut, Auxetic nuclei in embryonic stem cells exiting pluripotency, Nature Materials 13:638–644 (2014), doi:10.1038/nmat3943


• C. Londono, M.J. Loureiro, B. Slater, P.B. Lucker, J. Soleas, S. Sathananthan, J.S. Aitchison, A. Kabla, A.P. McGuigan, Non-autonomous contact guidance signaling during collective cell migration, PNAS 111:1807-1812 (2014), doi:10.1073/pnas.1321852111


• A.R. Harris, J. Bellis, N. Khalilgharibi, T. Wyatt, B. Baum, A.J. Kabla and G.T. Charras, Generating suspended cell monolayers for mechanobiological studies, Nature Protocols 8:2516–2530 (2013), doi:10.1038/nprot.2013.151


• K. Doxzen, S.R. Vedula, M.C. Leong, H. Hirata, N.S. Gov, A.J. Kabla, B. Ladoux and C.T. Lim, Guidance of collective cell migration by substrate geometry, Integrative Biology 5:1026-1035 (2013), doi:10.1039/C3IB40054A


• A.R. Harris, L. Peter, J. Bellis, B. Baum, A.J. Kabla, and G.T. Charras, Characterizing the mechanics of cultured cell monolayers, PNAS 109:16449-16454 (2012), doi:10.1073/pnas.1213301109


• S.R.K. Vedula, M.C. Leong, T.L. Laic, P. Hersen, A.J. Kabla, C.T. Lim and B. Ladoux, Emerging modes of collective cell migration induced by geometrical constraints, PNAS 109:12974-12979 (2012), doi:10.1073/pnas.1119313109


• A.J. Kabla, Collective Cell Migration: Leadership, Invasion and Segregation, Journal of the Royal Society Interface 9:3268-3278 (2012), doi:10.1098/​rsif.2012.0448


• J.-H. Dirks, MingHe Li, A.J. Kabla and W. Federle, In vivo dynamics of the internal fibrous structure in smooth adhesive pads of insects, Acta Biomaterialia 8:2730-2736 (2012), doi:10.1016/j.actbio.2012.04.008


• M. Saadatfar, A.P. Sheppard, T.J. Senden, A.J. Kabla, Mapping forces in a 3D elastic assembly of grains, Journal of the Mechanics and Physics of Solids 60:55-66 (2012), doi:10.1016/j.jmps.2011.10.001


• A.J. Kabla, G.B. Blanchard, R.J. Adams and L. Mahadevan, Bridging cell and tissue behaviour in embryomorphogenesis, Book chapter in Cell Mechanics: From Single Scale-Based Models to Multiscale Modeling, Taylor and Francis ed., pages 351-377 (2010), doi:ISBN 9781420094541


• D. Vader, A. Kabla, D. Weitz and L. Mahadevan, Elasticity of floppy and stiff random networks, PLoS ONE 4(6):e5902, doi:10.1371/journal.pone.0005902


• L.C. Butler, G.B. Blanchard, A.J. Kabla, N.J. Lawrence, D.P. Welchman, L. Mahadevan, R.J. Adams and B. Sanson, Cell shape changes indicate a role for extrinsic tensile forces in Drosophila germ-band extension, Nature Cell Biology 11(7):859-64 (2009), doi:10.1038/ncb1894


• A. Kabla and T. Senden, Dilatancy in slow granular flows, Physical Review Letters 102:228301 (2009), doi:10.1103/PhysRevLett.102.228301


• G.B. Blanchard, A.J. Kabla, N.L. Schultz, L.C. Butler, B. Sanson, N. Gorfinkiel, L. Mahadevan and R.J. Adams, Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation, Nature Methods 6:458-464 (2009), doi:10.1038/nmeth.1327


• M. G. Linguraru, A. Kabla, N. V. Vasilyev, P. J. del Nido, R. D. Howe, Real-Time Tracking and Shape Segmentation of Atrial Septal Defects in 3D echocardiography, Academic Radiology 14:1298 (2007), doi:10.1016/j.acra.2007.07.011


• A. Kabla, J. Scheibert and G. Debregeas, Quasistatic Rheology of Foams: II. Transition to Shear Banding, Journal of Fluid Mechanics, 587:45-72 (2007), doi:10.1017/S0022112007007276


• A. Kabla and G. Debregeas, Quasistatic Rheology of Foams: I. Response to small deformations, Journal of Fluid Mechanics, 587:23-44 (2007), doi:10.1017/S0022112007007264


• M. G. Linguraru, A. Kabla, N. V. Vasilyev, P. J. del Nido, R. D. Howe, Real-Time Block Flow Tracking of Atrial Septal Defect Motion in 4D Cardiac Ultrasound, 2007 4th IEEE International Symposium on Biomedical Imaging. Proceedings. p. 356-359 (2007), doi:10.1109/ISBI.2007.356862


• M. Wyart, H. Liang, A. Kabla and L. Mahadevan, Elasticity of floppy and stiff random networks, Physical Review Letters 101:215501 (2008), doi:10.1103/PhysRevLett.101.215501


• A. Kabla and L. Mahadevan, Nonlinear mechanics of soft fibre networks, Journal of the Royal Society Interface, 4(12):99-106 (2007), doi:10.1098/​rsif.2006.0151


• A. Kabla, G. Debregeas, J.-M. di Meglio and T. Senden, X-ray observation of micro-failures in granular piles approaching an avalanche, EuroPhysics Letter 71:932 (2005), doi:10.1209/epl/i2005-10165-4


• M. Saadarfar, A. Kabla, T.J. Senden and T. Aste, The geometry and the number of contacts of monodisperse sphere packs using X-ray tomography, R. Garcia-Rojo, H. Herrmann, S. McNamara (Eds.), Powders and Grains 2005, London: CRC Press, pp. 33-36 (2005), doi:10.1201/NOE0415383486


• A. Kabla and G. Debregeas, Contacts Dynamics of a Gently Vibrated Granular Pile, Physical Review Letters 92:035501 (2004), doi:10.1103/PhysRevLett.92.035501


• A. Kabla and G. Debregeas, Local Stress Relaxation and Shear Banding in a Dry Foam under Shear, Physical Review Letters 90:258303 (2003), doi:10.1103/PhysRevLett.90.258303